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nf-core/taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

classificationilluminalong-readsmetagenomicsmicrobiomenanoporepathogenprofilingshotguntaxonomic-classificationtaxonomic-profiling
These pages are for an old version of the pipeline (1.0.0). The latest stable release is 1.2.3 .
Launch version 1.0.0 https://github.com/nf-core/taxprofiler
  • Introduction
  • Usage
  • Parameters
  • Output
  • Results
  • Releases
    • 1.2.3
    • 1.2.2
    • 1.2.1
    • 1.2.0
    • 1.1.8
    • 1.1.7
    • 1.1.6
    • 1.1.5
    • 1.1.4
    • 1.1.3
    • 1.1.2
    • 1.1.1
    • 1.1.0
    • 1.0.1
    • 1.0.0
    • dev
Introduction Usage Parameters Output Results Releases
  • 1.2.3
  • 1.2.2
  • 1.2.1
  • 1.2.0
  • 1.1.8
  • 1.1.7
  • 1.1.6
  • 1.1.5
  • 1.1.4
  • 1.1.3
  • 1.1.2
  • 1.1.1
  • 1.1.0
  • 1.0.1
  • 1.0.0
  • dev
  1. nf-core-awsmegatests
  2. taxprofiler
  3. results-eaef6ac9bcfef0ae173919e45178415b9d3526fa/
  • Name Last Modified Size
  • bbduk/ bowtie2/ bracken/ centrifuge/ diamond/ fastp/ fastqc/ filtlong/ kaiju/ kraken2/ krakenuniq/ krona/ malt/ metaphlan3/ minimap2/ motus/ multiqc/ pipeline_info/ porechop/ run_merging/ samtools/ taxpasta/
    Making awesome workflows since 2018.

    Supported by:

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    See the source code for this website on GitHub:
    https://github.com/nf-core/website